"Bidirectional bridge: GitHub ⇄ bio.tools" https://doi.org/10.37044/osf.io/8ktd6_v1

"Here, we describe the tooling for a bidirectional bridge between the software developmentplatform GitHub and the ELIXIR bio.tools registry of life sciences software tools and dataresources. The developed bridge maps and improves metadata records across these twoplatforms, thereby benefiting both and helping make research software more FAIR: findable,accessible, interoperable and reusable" https://osf.io/preprints/biohackrxiv/8ktd6_v1

#BH25EU #BioHack25EU #biohackathon #ELIXIREurope #bioTools

"Mining the potential of knowledge graphs for metadata on training" https://doi.org/10.37044/osf.io/gv2ac_v1

"A dedicated pipeline parses RDF/Turtle dumps, deduplicates entries, and builds rich indexes (keyword, provider, location, date, topic) that power a Model Context Protocol (MCP) server. The MCP offers live and offline search tools—including keyword, provider, location, date, topic, and SPARQL queries" https://index.biohackrxiv.org/2025/11/29/gv2ac.html

#biohackathon #BioHackEU25 #BH25EU #SPARQL #MCP

OSF

Another good year for explicit CiTO annotations! https://scholia.toolforge.org/cito/

Thanks to all Journal of Cheminformatics and BioHackrXiv authors!!!

Looking forward to the #BH25EU and #BH25DE preprints with CiTO annotations! Help us set a new record ;)

#publishing #cito #innovation #BioHackRXiv

I hope to follow a good bit of the #BH25EU this year. I just signed up for virtual attendenc. My primary will be "Project 1: A shape-driven visual interface to integrate heterogeneous biomedical databases into knowledge graphs" by Javier, Tooba, and Yojana https://github.com/elixir-europe/biohackathon-projects-2025/blob/main/1.md
biohackathon-projects-2025/1.md at main · elixir-europe/biohackathon-projects-2025

Project descriptions for BioHackathon Europe 2025. Contribute to elixir-europe/biohackathon-projects-2025 development by creating an account on GitHub.

GitHub